Pérez J (2021)
Fungi of the human gut microbiota: Roles and significance
Int J Med Microbiol 311(3):151490

Moreno-Velásquez SD, Tint SH, del Olmo Toledo V, Torsin S, De S, Pérez JC (2020)
The regulatory proteins Rtg1/3 govern sphingolipid homeostasis in the human associated yeast Candida albicans
Cell Reports 30:620-629

Pérez JC (2019)
Candida albicans dwelling in the mammalian gut
Current Opinion in Microbiology 52:41-46

Pérez JC (2019)
mSphere of Influence: a systematic approach to dissect virulence traits in Candida albicans
mSphere 4:e00258-19

Cottier F, Sherrington S, Cockerill S, Del Olmo Toledo V, Kissane S, Tournu H, Orsini L, Palmer GE, Pérez JC, Hall RA (2019)
Remasking of Candida albicans β-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing
mBio 10:e02347-19

del Olmo Toledo V, Puccinelli R, Fordyce PM, Pérez JC (2018)
Diversification of DNA binding specificities enabled SREBP transcription regulators to expand the repertoire of cellular functions that they govern in fungi
PLoS Genetics doi: 10.1371/journal.pgen.1007884

Meir J, Hartman E, Eckstein MT, Guiducci E, Kirchner F, Rosenwald A, LeibundGut-Landmann S, Pérez JC (2018)
Identification of Candida albicans regulatory genes governing mucosal infection
Cell Microbiol e12841

Böhm L, Torsin S, Tint SH, Eckstein MT, Ludwig T, Pérez JC (2017)
The yeast form of the fungus Candida albicans promotes persistence in the gut of gnotobiotic mice
PLoS Pathog  25;13(10):e1006699. doi: 10.1371

Böhm L, Muralidhara P, Pérez JC (2015)
A Candida albicans regulator of disseminated infection operates primarily as a repressor and governs cell surface remodeling
Mol Microbiol 23:doi: 10.1111/mmi.13320

De S, Pérez JC (2014)
Reshuffling transcriptional circuits: How microorganisms adapt to colonize the human body
Transcription 5: e976095

Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD (2014)
How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes
Genes Dev 48: 1272-1277

Pérez JC, Johnson AD (2013)
Regulatory circuits that enable proliferation of the fungus Candida albicans in a mammalian host
PLoS Pathog 9(12):e1003780

Pérez JC, Kumamoto CA, Johnson AD (2013)
Candida albicans commensalism and pathogenicity are intertwined traits directed
by a tightly knit transcriptional regulatory circuit
PLoS Biol 11(3):e1001510

Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, Zhou Y, Siegal ML, Sinha H (2012)
Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity
Genome Res 22(10):1930-9

Zwir I, Latifi T, Perez JC, Huang H, Groisman EA (2012)
The promoter architectural landscape of the Salmonella PhoP regulon
Mol Microbiol  84(3):463-85

Kuster DJ, Zhang X, Pérez JC, Marshall GR (2009)
Controlling molecular network behavior: molecular design and two-component signal transduction systems
Mazzarella R, Head R. (Eds.) Research Signpost, Kerala, India

Pérez JC, Groisman EA (2009)
Evolution of transcriptional regulatory circuits in bacteria
Cell 138: 233-244

Pérez JC, Groisman EA (2009)
Transcription factor function and promoter architecture govern the evolution of bacterial regulons
Proc Natl Acad Sci USA 106: 4319-4324

Pérez JC, Shin D, Zwir I, Latifi T, Hadley TJ, Groisman EA (2009)
Evolution of a bacterial regulon controlling virulence and Mg²⁺ homeostasis
PLoS Genet 5: e1000428

Pérez JC, Latifi T, Groisman EA (2008)
Overcoming H-NS-mediated transcriptional silencing of horizontally-acquired genes by the PhoP and SlyA proteins in Salmonella enterica
J Biol Chem 283: 10773-10783

Pérez JC, Groisman EA (2007)
Acid pH activation of the PmrA/PmrB two-component regulatory system of Salmonella enterica
Mol Microbiol 63: 283-293

Ogura M*, Pérez JC*, Mittl PRE, Lee HK, Dailide G, Tan S, Ito Y, Secka O, Dailidiene D, Putty K, Berg DE, Kalia A (2007)
Helicobacter pylori evolution: lineage-specific adaptations in homologs of eukaryotic Sel1-like genes
PLoS Comput Biol 3: e151 *Equal authorship

Pastor P, Ezquerra M, Pérez JC, Chakraverty S, Norton J, Racette BA, McKeel D, Perlmutter JS, Tolosa E, Goate AM (2004)
Novel haplotypes in 17q21 are associated with progressive supranuclear palsy
Ann Neurol 56: 249-258

Fuchs BC, Pérez JC, Suetterlin J, Chaudhry SB, Bode BP (2004)
Inducible antisense RNA targeting amino acid transporter ATB0/ASCT2 elicits apoptosis in human hepatoma cells
Am J Physiol Gastrointest Liver Physiol 286: G467-G478

Leone PE, Pérez JC, Morillo S, Paz-y-Miño C (2002)
Low incidence of follicular lymphoma and t(14;18)(q32;q21) by polymerase chain reaction analysis: Observations on Ecuadorian patients
Cancer Genet Cytogenet 137: 72-74

Paz-y-Miño C, Pérez JC, Fiallo F, Leone PE (2002)
A polymorphism in the hMSH2 gene (gIVS12-6T>C) associated with non-Hodgkin lymphomas
Cancer Genet Cytogenet 133: 29-33

Paz-y-Miño C, Pérez JC, Dávalos V, Sánchez ME, Leone PE (2001)
Telomeric associations in cigarette smokers exposed to low levels of X-rays
Mutat Res 490: 77-80

Paz-y-Miño C, Pérez JC, Burgos R, Dávalos V, Leone PE (1999)
The DF508 Mutation in Ecuador, South America
Hum Mutat 14: 348-350