Original Publications   

Tiffany CR, Lee JY, Rogers AWL, Olsan EE, Morales P, Faber F*, Baumler A* (2021)
The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum.
Microbiome accepted
* authors contributed equally

Ponath F, Tawk C, Zhu Y, Barquist L, Faber F, Vogel J (2021)
RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum.
Nature Microbiology 2021 doi: 10.1038/s41564-021-00927-7

Fuchs M*, Lamm-Schmidt V*, Sulzer J, Ponath F, Jenniches L, Kirk JA, Fagan RP, Barquist L, Vogel J, Faber F (2021)
An RNA-centric global view of the clinically important bacterium Clostridioides difficile reveals broad activity of Hfq in a Gram-positive species.
PNAS doi:10.1073/pnas.2103579118
* authors contributed equally

Lamm-Schmidt V, Fuchs M, Sulzer J, Gerovac M, Hör J, Dersch P, Vogel J, Faber F (2021) 
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production.
microLife uqab004:10.1093/femsml/uqab004

Saedtler M, Förtig N, Ohlsen K, Faber F, Masota N, Kowalick K, Holzgrabe U, Meinel L (2020)
Anti-bacterial anacardic acid derivatives.
ACS Infectious Diseases doi: 10.1021/acsinfecdis.9b00378

Velazquez EM, Nguyen H, Heasley KT, Seachao CH, Gil LM, Rogers AWL, Miller BM, Rolston MR, Lopez CA, Litvak Y, Liou MJ, Faber F, Bronner DN, Tiffany CR, Byndloss MX, Byndloss AJ, Bäumler AJ (2019)
Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection.
Nature Microbiology doi:10.1038/s41564-019-0407-8

An SQ, Ding YC, Faber F, Hobley L, Sá-Pessoa J (2019)
Social behaviour and making attachments: a report from the fifth 'Young Microbiologists Symposium on Microbe Signalling, Organisation and Pathogenesis'
Microbiology 165(2):138-145

Litvak Y, Mon KKZ, Nguyen H, Chanthavixay G, Liou M, Velazquez EM, Kutter L,Alcantara MA, Byndloss MX, Tiffany CR, Walker GT, Faber F, Zhu Y, Bronner DN, Byndloss AJ, Tsolis RM, Zhou H, Bäumler AJ (2019)
Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition
Cell Host Microbe 9;25(1):128-139

Bronner DN, Faber F, Olsan EE, Byndloss MX, Sayed NA, Xu G, Yoo W, Kim K, Ryu S, Lebrilla CB, Bäumler AJ (2017) Genetic ablation of butyrate utilization attenuates gastrointestinal Salmonella disease Cell Host & Microbe 23(2):266-273

Byndloss MX, Olsan EE, Rivera-Chávez F, Tiffany CR, Cevallos SA, Lokken KL, Torres TP, Byndloss AJ, Faber F, Gao Y, Litvak Y, Lopez CA, Xu G, Napoli E, Giulivi C, Tsolis RM, Revzin A, Lebrilla CB, Bäumler AJ (2017)
Microbiota-activated PPAR-γ signaling inhibits dysbiotic Enterobacteriaceae expansion             
Science 357(6351):570-575

Faber F, Thiennimitr P, Spiga L, Byndloss MX, Litvak Y, Lawhon S, Andrews-Polymenis HL, Winter SE, Bäumler AJ (2017)
Respiration of microbiota-derived 1,2-propanediol drives Salmonella expansion during colitis
PLoS Pathogens 13(1):e1006129

Elfenbein JR, Knodler LA, Schaeffer AR, Faber F, Bäumler AJ, Andrews-Polymenis HL (2017)
A Salmonella Regulator Modulates Intestinal Colonization and Use of Phosphonoacetic Acid
Front Cell Infect Microbiol 15;7:69

Faber F, Tran L, Byndloss MX, Lopez CA, Velazquez EM, Kerrinnes T, Nuccio SP, Wangdi T, Fiehn O, Tsolis RM, Bäumler AJ (2016)
Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion
Nature 534(7609):697-9

Rivera-Chávez F, Zhang LF, Faber F, Lopez CA, Byndloss MX, Olsen EE, Xu G, Velazquez EM, Lebrilla CB, Winter SE, Bäumler AJ (2016)
Depletion of Clostridia from the gut microbiota drives an aerobic luminal expansion of Salmonella
Cell Host & Microbe 19(4):443-54

Mooney JP, Lokken KL, Byndloss MX, George MD, Velazquez EM, Faber F, Butler BP, Walker GT, Ali MM, Potts R, Tiffany C, Ahmer BM, Luckhart S, Tsolis RM (2015)              
Inflammation-associated alterations to the intestinal microbiota reduce colonization resistance against non-typhoidal Salmonella during concurrent malaria parasite infection             
Scientific Reports 5(5):14603

Winter SE, Winter MG, Poon V, Keestra AM, Sterzenbach T, Faber F, Costa LF, Cassou F, Costa EA, Alves GE, Paixão TA, Santos RL, Bäumler AJ (2014)         
Salmonella enterica Serovar Typhi conceals the invasion-associated type three secretion system from the innate immune system by gene regulation
PLoS Pathogens 10(7):e1004207

Skiebe E, de Berardinis V, Morczinek P, Kerrinnes T, Faber F, Lepka D, Hammer B, Zimmermann O, Ziesing S, Wichelhaus TA, Hunfeld KP, Borgmann S, Gröbner S, Higgins PG, Seifert H, Busse HJ, Witte W, Pfeifer Y, Wilharm G (2012)
Surface-associated motility, a common trait of clinical isolates of Acinetobacter baumannii, depends on 1,3-diaminopropane
International Journal of Medical Microbiology 302(3):117-28

Volkmann M, Skiebe E, Kerrinnes T, Faber F, Lepka D, Pfeifer Y, Holland G, Bannert N, Wilharm G (2010)
Orbus hercynius gen. nov., sp. nov., isolated from faeces of wild boar, is most closely related to members of the orders Enterobacteriales and Pasteurellales
International Journal of Systematic and Evolutionary Microbiology 60(Pt 11):2601-5

Wilharm G, Lepka D, Faber F, Hofmann J, Kerrinnes T, Skiebe E (2010)
A simple and rapid method of bacterial transformation
Journal of Microbiological Methods 80(2):215-6

Kerrinnes T, Zelas Z, Streckel W, Faber F, Tietze E, Tschäpe H, Yaron S (2009)
CsrA and CsrB are required for the post-ranscriptional  control of the virulence-associated effector protein AvrA of Salmonella enterica
International Journal of Medical Microbiology 299(5):333-41

Forster G, Schwieger C, Faber F, Weber T, Blume A (2007)
Influence of poly(L:-lysine) on the structure of dipalmitoylphosphatidylglycerol/water studied by X-ray scattering
European Biophysics Journal 36(4-5):425-35

Faber F, Gembardt F, Sun X, Mizutani S, Siems WE, Walther T (2006)
Lack of angiotensin II conversion to angiotensin III increases water but not alcohol consumption in aminopeptidase A-deficient mice
Regulatory Peptides. 136(1-3):130-7


Olsen E, Byndloss MX, Faber F, Rivera-Chávez F, Tsolis RM, Bäumler AJ (2017)
Colonization resistance: the deconvolution of a complex trait
Journal of Biological Chemistry 292(21):8577-8581

Faber F, Bäumler AJ (2014)
The impact of intestinal inflammation on the nutritional environment of the gut microbiota
Immunology Letters. 162(2 Pt A):48-53