2021

Pernitzsch SR, Alzheimer M, Bremer BU, Robbe-Saule M, de Reuse H, Sharma CM (2021)
Small RNA mediated gradual control of lipopolysaccharide biosynthesis control affects antibiotic resistance in Helicobacter pylori
Nature Communications, 12, 4433 (2021) doi.org/10.1038/s41467-021-24689-2

Ponath F, Tawk C, Zhu Y, Barquist L, Faber F, Vogel J (2021)
RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum
Nature Microbiology doi: 10.1038/s41564-021-00927-7)

Popella L, Jung J, Popova K, Ðurica-Mitić S, Barquist L, Vogel J (2021)
Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics
Nucleics Acids Research 49(8):4705-4724

Lamm-Schmidt V, Fuchs M, Sulzer J, Gerovac M, Hör J, Dersch P, Vogel J, Faber F (2021)
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production
microLife 2:uqab004

Jiao C, Sharma S†, Dugar G†, Peeck NL, Bischler T, Wimmer F, Yu Y, Barquist L, Schoen C, Kurzai C, Sharma CM*, Beisel CL* † Equally contributing; * Corresponding authors (2021)
Non-canonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9
Science 372(6545):941-948

Bauer M, Nascakova Z, Mihai AI, Cheng PF, Levesque MP, Lampart S, Hurwitz R, Pfannkuch L, Dobrovolna J, Jacobs M, Bartfeld S, Dohlman A, Shen X, Gall AA, Salama NR, Töpfer A, Weber A, Meyer TF, Janscak P, Müller A (2020)
The ALPK1/TIFA/NF-
κB axis links a bacterial carcinogen to R-loop-induced replication stress
Nature Communications 11(1):5117

Bernhardt L, Dittrich M, El‑Merahbi R, Saliba AE, Müller T, Sumara G, Vogel J, Nichols‑Burns S, Mitchell, Haaf T, El Hajj N (2021)
A genome‑wide transcriptomic analysis of embryos fathered by obese males in a murine model of diet‑induced obesity
Scientific Reports 11(1):1979

Westermann AJ, Vogel J (2021)
Cross-species RNA-seq for deciphering host-microbe interactions
Nat Rev Genet 22(6):361-378 Review

Da Vià MC, Dietrich O, Truger M, Arampatzi P, Duell J, Heidemeier A, Zhou X, Danhof S, Kraus S, Chatterjee M, Meggendorfer M, Twardziok S, Goebeler ME, Topp MS, Hudecek M, Prommersberger S, Hege K, Kaiser S, Fuhr V, Weinhold N, Rosenwald A, Erhard F, Haferlach C, Einsele H, Kortüm KM, Saliba AE, Rasche L (2021)            
Homozygous BCMA gene deletion in response to anti-BCMA CAR T cells in a patient with multiple myeloma
Nature Medicine 27(4):616-619

Marincola G, Jaschkowitz G, Kieninger AK, Wencker FDR, Feßler AT, Schwarz S, Ziebuhr W (2021)
Plasmid-chromosome crosstalk in Staphylococcus aureus: A horizontally acquired transcription regulator controls polysaccharide intercellular adhesin (PIA)-mediated biofilm formation
Front Cell Infect Microbiol (accepted)

Santos SC, Bischler T, Westermann AJ*, Vogel J* (2021)
MAPS integrates overlooked regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT
Cell Reports (in press)

Schmidt N, Lareau C, Keshishian H, Ganskih S, Schneider C, Hennig T, Melanson R, Werner S, Wei Y, Zimmer M, Ade J, Kirschner L, Zielinski S, Dölken L, Lander ES, Caliskan N, Fischer U, Vogel J, Carr S, Bodem J, Munschauer M (2021)
The SARS-CoV-2 RNA-protein interactome in infected human cells
Nature Microbiology 6(3):339-353

Tiffany CR, Lee JY, Rogers AWL, Olsan EE, Morales P, Faber F*, Baumler A* (2021)
The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum.
Microbiome (accepted)

Vazquez-Laslop N, Sharma CM, Mankin A, Buskirk AR (2021)
Identifying small ORFs in prokaryotes with ribosome profiling
Journal of Bacteriology (accepted)

Fuchs M, Lamm-Schmidt V, Sulzer J, Ponath F, Jenniches L, Kirk JA, Fagan RP, Barquist L, Vogel J, Faber F (2021)
An RNA-centric global view of Clostridioides difficile reveals broad activity of Hfq in a clinically important gram-positive bacterium
PNAS 22;118(25):e2103579118

Fuhr V, Vafadarnejad E, Dietrich O, Arampatzi P, Riedel A, Saliba AE, Rosenwald A, Rauert-Wunderlich H (2021)     
Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment.
International Journal of Molecular Sciences 22(5):2276

Rivera-Calzada A, Famelis N, Llorca O, Geibel S (2021)
Type VII secretion systems: structure, functions and transport models
Nat Rev Microbiol 26. doi: 10.1038

Bartfeld S (2021)
Realizing the potential of organoids-an interview with Hans Clevers
J Mol Med (Berl) 99(4):443-447

El Mouali Y, Gerovac M, Mineikaitė R, Vogel J (2021)
In vivo targets of Salmonella FinO include a FinP-like small RNA controlling copy number of a cohabitating plasmid
Nucleic Acids Research 49(9):5319-5335

Gerovac M, Vogel J, Smirnov A (2021)
The world of stable ribonucleoproteins and its mapping with Grad-seq and related approaches
Frontiers in Molecular Biosciences 7;8:661448

Gerovac M, Wicke L, Chihara K, Schneider C, Lavigne R, Vogel J (2021)
A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions
mBio 9;12(1):e03454-20

Hör J, Vogel J (2021)
Analysis of the RNA and Protein Complexome by Grad-seq
Methods Mol Biol 2300:183-201

Kayisoglu Ö, Schlegel N, Bartfeld S (2021)
Gastrointestinal epithelial innate immunity-regionalization and organoids as new model
J Mol Med (Berl) 99(4):517-530

Koo BK, Bartfeld S, Alev C (2021)
Organoids: ready for the revolution?
Journal of Molecular Medicine 99(4):441-442

Mottola A, Ramírez-Zavala B, Hünniger K, Kurzai O, Morschhäuser J (2021)
The zinc cluster transcription factor Czf1 regulates cell wall architecture and integrity in Candida albicans
Mol Microbiol 15. doi: 10.1111/mmi.14727

Pérez J (2021)
Fungi of the human gut microbiota: Roles and significance
Int J Med Microbiol 311(3):151490

Wallaschek N, Reuter S, Silkenat S, Wolf K, Niklas C, Kayisoglu Ö, Aguilar C, Wiegering A, Germer CT, Kircher S, Rosenwald A, Shannon-Lowe C, Bartfeld S (2021)
Ephrin receptor A2, the epithelial receptor for Epstein-Barr virus entry, is not available for efficient infection in human gastric organoids
PLoS Pathogens 17(2):e1009210

Wencker FDR, Marincola G, Schoenfelder SMK, Maaß S, Becher D, Ziebuhr W (2021)
Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: Unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decay
Nucleic Acids Research doi: 10.1093/nar/gkaa1277.
Online ahead of print

Westermann AJ, Kruck D, Hintzsche H (2021)
Aktuell
Biospektrum 27, 60-61

2020

Aguilar C, Cruz AR, Rodrigues Lopes I, Maudet C, Sunkavalli U, Silva RJ, Sharan M, Lisowski C, Zaldívar-López S, Garrido JJ, Giacca M, Mano M, Eulalio A (2020)
Functional screenings reveal different requirements for host microRNAs in Salmonella and Shigella infection
Nature Microbiology 5(1):192-205. doi: 10.1038/s41564-019-0614-3

Alzheimer M, Svensson SL, König F, Schweinlin M, Metzger M, Walles H, Sharma CM  (2020)
A three-dimensional intestinal tissue model reveals factors and small regulatory RNAs important for colonization with Campylobacter jejuni
PLoS Pathogen 18;16(2):e1008304. doi: 10.1371/journal.ppat.1008304

Banchenko. S, Weise C, Lanka E, Saenger W, Geibel S (2020)
The helix bundle domain of primase RepB’ is required for dinucleotide formation and extension
bioRxiv doi: https://doi.org/10.1101/2020.02.20.955914

Barthels F, Marincola G, Marciniak T, Konhauser M, Hammerschmidt S, Bierlmeier J, Distler U, Wich PR, Tenzer S, Schwarzer D, Ziebuhr W, & Schirmeister T (2020)
Asymmetric Disulfanylbenzamides as Irreversible and Selective Inhibitors of Staphylococcus aureus Sortase A
ChemMedChem 15(10):839-850

Bauer M, Nascakova Z, Mihai AI, Cheng PF, Levesque MP, Lampart S, Hurwitz R, Pfannkuch L, Dobrovolna J, Jacobs M, Bartfeld S, Dohlman A, Shen X, Gall AA, Salama NR, Töpfer A, Weber A, Meyer TF, Janscak P, Müller A (2020)
The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress
Nature Communications 11(1):5117

Bauriedl S, Gerovac M, Heidrich N, Bischler T, Barquist L, Vogel J, Schoen C (2020)
The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Nature Communications 11(1):2823

Chumduri C, Gurumurthy RK, Berger H, Dietrich O, Kumar N, Koster S, Brinkmann V, Hoffmann K, Drabkina M, Arampatzi P, Son D, Klemm U, Mollenkopf HJ, Herbst H, Mangler M, Vogel J, Saliba AE, Meyer TF (2020)
Opposing Wnt signals 1 regulate cervical squamocolumnar homeostasis and emergence of metaplasia
Nature Cell Biology in press

Domenech A, Brochadi AR, Sender V, Hentrich K, Henriques-Normark B, Typas A, Veening JW
Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer
Cell Host Microbe 22. pii: S1931-3128(20)30073-1

Eisenbart SK#, Alzheimer M#, Pernitzsch SR, Dietrich S, Stahl S, Sharma CM (2020)
A Repeat-Associated Small RNA Controls the Major Virulence Factors of Helicobacter pylori
Molecular Cell 80(2):210-226.e7

Gelhausen R, Heyl F, Svensson SL, Froschauer K, Hadjeras L, Sharma CM, Eggenhofer F, Backofen R (2020)
HRIBO - Workflow for high-throughput analysis of prokaryotic ribosome profiling experiments
Bioinformatics btaa959

Gerovac M, Mouali YEL, Kuper J, Kisker C, Barquist L, Vogel J (2020)
Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
RNA 26(10):1448-1463

Hennessen F, Miethke M, Zaburannyi N, Herrmann J, Loose M, Lukežič T, Hüttel S, Jansen R, Schmiedel J, Imirzalioglu C, Vogel J, Westermann AJ, Hesterkamp T, Stadler M, Wagenlehner F, Petković H, Müller R (2020)
Amidochelocardin overcomes resistance mechanisms exerted on tetracyclines and natural chelocardin.
Antibiotics 9(9):E619

Hollenhorst MI, Jurastow I, Nandigama R, Appenzeller S, Li L, Vogel J, Wiederhold S, Althaus M, Empting M, Altmüller J, Hirsch AKH, Flockerzi V, Canning BJ, Saliba AE, Krasteva-Christ G (2020)
Tracheal brush cells release acetylcholine in response to bitter tastants for paracrine and autocrine signaling
FASEB Journal 34(1):316-332

Hör J, Di Giorgio S, Gerovac M, Venturini E, Förstner KU, Vogel J (2020)
Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Nuclear Acids Research 48(16):9301-9319

Hör J, Garriss G, Di Giorgio S, Hack LM, Vanselow JT, Förstner KU, Schlosser A, Henriques-Normark B, Vogel J (2020)
Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control
EMBO J 39(9):e103852

Hör J, Matera G, Vogel J, Gottesman S, Storz G (2020)
Trans-acting small RNAs and their effects on gene expression in Escherichia coli and Salmonella enterica
EcoSal 9(1):10.1128/ecosalplus.ESP-0030-2019

Huber C, Stamm I, Ziebuhr W, Marincola G, Bischoff M, Strommenger B, Jaschkowitz G, Marciniak T, Cuny C, Witte W, Döllinger J, Schaudinn C, Thürmer A, Epping L, Semmler T, Lübke-Becker A, Wieler LH, & Walther B (2020)
Sillence as a way of niche adaptation: mecC-MRSA with variations in the accessory gene regulator (agr) functionality express kaleidoscopic phenotypes
Scientific Reports (accepted)

Imdahl F, Vafadarnejad E, Homberger C, Saliba AE*, Vogel J* (2020)
Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria
Nature Microbiology doi: 10.1038/s41564-020-0774-1. Online ahead of print

Josenhans C, Müthing J, Elling L, Bartfeld S, Schmidt H (2020)
How bacterial pathogens of the gastrointestinal tract use the mucosal glyco-code to harness mucus and microbiota: New ways to study an ancient bag of tricks
Int J Med Microbiology 16:151392. doi: 10.1016/j.ijmm.2020.151392

Kayisoglu O, Weiss F, Niklas C, Pierotti I, Pompaiah M, Wallaschek N, Germer CT, Wiegering A, Bartfeld S (2020)
Location-specific cell identity rather than exposure to GI microbiota defines many innate immune signalling cascades in the gut epithelium
Gut 22:gutjnl-2019-319919. doi: 10.1136

Korkut DN, Alves ID, Vogel A, Chabas S, Sharma CM, Martinez D, Loquet A, Salgado GF, Darfeuille F (2020)
Structural insights into the AapA1 toxin of Helicobacter pylori
Biochim Biophys Acta Gen Subj 1864(1):129423

Mayr EM, Ramírez-Zavala B, Krüger I, Morschhäuser J (2020)
A Zinc Cluster Transcription Factor Contributes to the Intrinsic Fluconazole Resistance of Candida auris
mSphere 22;5(2):e00279-20

Michaux C, Hansen EE, Jenniches L, Gerovac M, Barquist L, Vogel J, (2020)
Single-nucleotide RNA maps for the two major nosocomial pathogens Enterococcus faecalis and Enterococcus faecium
Frontiers in Cellular & Infection Microbiology in press

Mietrach N, Damián-Aparicio D, Isupov M, Krupka M, Lopez D, Geibel S (2020)
The conserved core component EsaA mediates bacterial killing by the type VIIb secretion system
Research Square doi: https://doi.org/10.21203/rs.3.rs-95626/v2

Mietrach N, Diana Damián-Aparicio, Mielich-Süß B, Lopez D, Geibel S (2020)
Substrate interaction with the EssC coupling protein of the type VIIb secretion system
Journal Bacteriology pii JB.00646-19

Mika-Gospodorz B*, Giengkam S*, Westermann AJ, Wongsantichon J, Kion-Crosby W, Chuenklin S, Wang LC, Sunyakumthorn P, Sobota RM, Subbian S, Vogel J, Barquist L, Salje J (2020)
Dual RNA-seq provides insight into the biology of the neglected intracellular human pathogen Orientia tsutsugamushi
Nature Communications 11(1):3363

Moreno-Velásquez SD, Tint SH, del Olmo Toledo V, Torsin S, De S, Pérez JC (2020)
The regulatory proteins Rtg1/3 govern sphingolipid homeostasis in the human associated yeast Candida albicans
Cell Reports 30:620-629

Mottola A, Schwanfelder S, Morschhäuser J (2020)
Generation of viable Candida albicans mutants lacking the “essential” protein kinase Snf1 by inducible gene deletion
mSphere 5: e00805-20

Mühlberg E, Umstätter F, Domhan C, Hertlein T, Ohlsen K, Krause A, Kleist C, Beijer B, Zimmermann S, Haberkorn U, Mier W, Uhl P (2020)
Vancomycin-Lipopeptide Conjugates with High Antimicrobial Activity on Vancomycin-Resistant Enterococci
Pharmaceuticals (Basel) 29;13(6):110

Parhi L, Alon-Maimon T, Sol A, Nejman D, Shhadeh A, Fainsod-Levi T, Yajuk O, Isaacson B, Abed J, Maalouf N, Nissan A, Sandbank J, Yehuda-Shnaidman E, Ponath F, Vogel J, Mandelboim O, Granot Z, Straussman R, Bachrach G (2020)
Breast cancer colonization by Fusobacterium nucleatum accelerates tumor growth and metastatic progression
Nature Communications 11(1):3259

Prezza G, Heckel T, Dietrich S, Homberger C, Westermann AJ*, Vogel J* (2020)
Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads
RNA 26(8):1069-1078

Riedel C, Förstner KU, Püning C, Alter T, Sharma CM, Gölz G (2020)
Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress
Frontier Microbiology 27;11:523

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni J, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T & LifeTime Community (2020)
LifeTime and improving European healthcare through cell-based interceptive medicine
Nature in press

Ruben S, Garbe E, Mogavero S, Albrecht-Eckardt D, Hellwig D, Häder A, Krüger T, Gerth K, Jacobsen ID, Elshafee O, Brunke S, Hünniger K, Kniemeyer O, Brakhage AA, Morschhäuser J, Hube B, Vylkova S, Kurzai O, Martin R (2020)
Ahr1 and Tup1 Contribute to the Transcriptional Control of Virulence-Associated Genes in Candida albicans
mBio 28;11(2):e00206-20

Ryan D, Jenniches L, Reichardt S, Barquist L, Westermann AJ (2020)
A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron
Nature Communications 11(1):3557

Saedtler M, Förtig N, Ohlsen K, Faber F, Masota N, Kowalick K, Holzgrabe U, Meinel L (2020)
Antibacterial Anacardic Acid Derivatives
ACS Infect Dis 10;6(7):1674-1685

Schulte LN*, Schweinlin M*, Westermann AJ, Janga H, Santos SC, Appenzeller S, Walles H, Vogel J, Metzger M (2020)
An advanced human intestinal co-culture model reveals compartmentalized host and pathogen strategies during Salmonella infection
mBio 11(1). pii: e03348-19

Schulte-Schrepping J, Reusch N, Paclik D, Baßler K, Schlickeiser S, Zhang B, Krämer B, et al., Nattermann J, Sawitzki B, Saliba AE, Sander LE; Deutsche COVID-19 OMICS Initiative, DeCOI (2020)
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
Cell in press (Vogel, J co-authorship as member of DeCOI)

Seelbinder B#, Wallstabe J#, Marischen L#, Weiss E, Wurster S, Page L, Löffler C, Bussemer L, Schmitt A-L, Wolf T, Linde J, Cicin-Sain L, Becker J, Kalinke U, Vogel J, Panagiotou G, Einsele H, Westermann AJ*, Schäuble S*, Löffler J* (2020)
Triple RNA-seq reveals synergy in a human virus-fungus co-infection model
Cell Reports 33(7):108389

Stanifer ML, Mukenhirn M, Muenchau S, Pervolaraki K, Kanaya T, Albrecht D, Odendall C, Hielscher T, Haucke V, Kagan JC, Bartfeld S, Ohno H, Boulant S (2020)
Asymmetric distribution of TLR3 leads to a polarized immune response in human intestinal epithelial cells
Nature Microbiology 5(1):181-191. doi: 10.1038/s41564-019-0594-3

Umstätter F, Domhan C, Hertlein T, Ohlsen K, Mühlberg E, Kleist C, Zimmermann S, Beijer B, Klika KD, Haberkorn U, Mier W, Uhl P (2020)
Vancomycin Resistance Is Overcome by Conjugation of Polycationic Peptides
Angew Chem Int Ed Engl 2;59(23):8823-8827

Venturini E, Svensson SL, Maass S, Gelhausen R, Eggenhofer F, Li L, Cain AK, Parkhill J, Becher D, Backofen R, Barquist L, Sharma CM, Westermann AJ, Vogel J (2020)
An integrative global data-driven census of Salmonella small proteins and their potential functions in virulence
microLife uqaa.002

Vogel J (2020)
An RNA biology perspective on species-specific programmable RNA antibiotics
Molecular Microbiology 113(3):550-559

Westmeier D, Posselt G, Hahlbrock A, Bartfeld S, Vallet C, Abfalter C, Docter D, Knauer SK, Wessler S, Stauber RH (2020)
Correction: Nanoparticle binding attenuates the pathobiology of gastric cancer-associated Helicobacter pylori
Nanoscale 23;12(3):2154-2155. doi: 10.1039/c9nr90287b

Wicke L, Ponath F, Coppens L, Gerovac M, Lavigne R, Vogel J (2020)
Introducing Differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ
RNA Biology in press

Yasrebi K, Schade N, Adeniyi ET, Wecklein B, Ymeraj A, Hertlein T, Ohlsen K, Suzen S, Lalk M, Ströhl D, Hilgeroth A (2020)
Novel effective antibacterial small-molecules against Staphylococcus and Enterococcus strains
Future Med Chem 12(13):1205-121

 


2019

Aguilar C, Mano M, Eulalio A (2019)
MicroRNAs at the Host-Bacteria Interface: Host Defense or Bacterial Offense
Trends Microbiology 27(3):206-218

An SQ, Ding YC, Faber F, Hobley L, Sá-Pessoa J (2019)
Social behaviour and making attachments: a report from the fifth 'Young Microbiologists Symposium on MicrobeSignalling, Organisation and Pathogenesis'
Microbiology 165(2):138-145

Ashraf K, Yasrebi K, Adeniyi ET, Hertlein T, Ohlsen K, Lalk M, Erdmann F, Hilgeroth A (2019)
Antistaphylococcal evaluation of indole-naphthalene hybrid analogs
Drug Des Developmental Therapy 10;13:275-283

Chihara K, Bischler T, Barquist L, Monzon VA, Noda N, Vogel J, Tsuneda S (2019)
Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
mSystems 3;4(6). pii: e00590-19. doi:10.1128

Cottier F, Sherrington S, Cockerill S, Del Olmo Toledo V, Kissane S, Tournu H, Orsini L, Palmer GE, Pérez JC, Hall RA (2019)
Remasking of Candida albicans β-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing
mBio 10:e02347-19

Famelis N, Rivera-Calzada A, Degliesposti G, Wingender M, Mietrach N, Skehel JM, Fernandez-Leiro R, Böttcher B, Schlosser A, Llorca O, Geibel S (2019)
Architecture of the mycobacterial type VII secretion system
Nature 576:321-325

Mietrach, N, Schlosser A, Geibel S (2019)
An extracellular domain of the EsaA membrane component of the type VIIb secretion system: expression, purification and crystallization
Acta Crystallographica F75, 725-730

Fan SH, Ebner P, Reichert S, Hertlein T, Zabel S, Lankapalli AK, Nieselt K, Ohlsen K, Götz F (2019)
MpsAB is important for Staphylococcus aureus virulence and growth at atmospheric CO(2) levels
Nature Communication 9;10(1):3627

Gerovac M, Vogel J (2019)
An RNA Surprise in Bacterial Effector Mechanisms
Cell Host Microbes 11;26(6):709-711

Heilmann C, Ziebuhr W, Becker K (2019)
Are coagulase-negative staphylococci virulent?
Clin Microbiol Infect 25(9):1071-1080

Hilgeroth A, Yasrebi K, Suzen S, Hertlein T, Ohlsen K, Lalk M (2019)
Antibacterial Evaluation of Novel Substituted Cycloheptaindoles in Staphylococcus and Enterococcus Strains
Medicinal  Chemistry 15(8):833-839

Korkut DN, Alves ID, Vogel A, Chabas S, Sharma CM, Martinez D, Loquet A,Salgado GF, Darfeuille F (2019)
Structural insights into the AapA1 toxin of Helicobacter pylori
Biochimica Biophysica Acta Gen Subj 30:129423

Kraus AJ, Brink BG, Siegel TN (2019)
Efficient and specific oligo-based depletion of rRNA
Scientific Reports 22;9(1):12281

Lerch MF, Schoenfelder SMK, Marincola G, Wencker FDR, Eckart M, Förstner KU, Sharma CM, Thormann KM, Kucklick M, Engelmann S, Ziebuhr W (2019)
A non-coding RNA from the intercellular adhesion (ica) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesion (PIA)-mediated biofilm formation
Molecular Microbiology 111(6):1571-1591

Litvak Y, Mon KKZ, Nguyen H, Chanthavixay G, Liou M, Velazquez EM, Kutter L, Alcantara MA, Byndloss MX, Tiffany CR, Walker GT, Faber F, Zhu Y, Bronner DN, Byndloss AJ, Tsolis RM, Zhou H, Bäumler AJ (2019)
Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition
Cell Host Microbe 9;25(1):128-139

Marincola G, Wencker FDR, Ziebuhr W (2019)
The Many Facets of the Small Non-coding RNA RsaE (RoxS) in Metabolic Niche Adaptation of Gram-Positive Bacteria
Journal Molecular Biolology 22;431(23):4684-4698. doi: 10.1016

Martins Gomes SF, Westermann AJ, Sauerwein T, Hertlein T, Förstner KU, Ohlsen K, Metzger M, Shusta EV, Kim BJ, Appelt-Menzel A, Schubert-Unkmeir A (2019)
Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis
Infection Front Microbiology 29;10:1181

Miyakoshi M, Matera G, Maki K, Sone Y, Vogel J (2019)
Functional expansion of a TCA cycle operon mRNA by a 3' end-derived small RNA
Nucleic Acids Research 28;47(4):2075-2088. doi: 10.1093/nar/gky1243

Mottola A, Morschhäuser J (2019)
An Intragenic Recombination Event Generates a Snf4-Independent Form of the Essential Protein Kinase Snf1 in Candida albicans
mSphere 19;4(3)

Nguyen MT, Saising J, Tribelli PM, Nega M, Diene SM, François P, Schrenzel J, Spröer C, Bunk B, Ebner P, Hertlein T, Kumari N, Härtner T, Wistuba D, Voravuthikunchai SP, Mäder U, Ohlsen K, Götz F (2019)
Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus
Frontier Microbiology 28;10:1157

Nishimoto AT, Zhang Q, Hazlett B, Morschhäuser J, Rogers PD (2019)
Contribution of Clinically Derived Mutations in the Gene Encoding the Zinc Cluster Transcription Factor Mrr2 to Fluconazole Antifungal Resistance and CDR1 Expression in Candida albicans
Antimicrobial Agents Chemotherapy 25;63(5)

Pérez JC (2019)
Candida albicans dwelling in the mammalian gut
Current Opinion Microbiology 24;52:41-46

Pérez JC (2019)
mSphere of Influence: a Systematic Approach To Dissect Virulence Traits in Candida albicans
mSphere 19;4(3)

Popp C, Ramírez-Zavala B, Schwanfelder S, Krüger I, Morschhäuser J (2019)
Evolution of Fluconazole-Resistant Candida albicans Strains by Drug-Induced Mating Competence and Parasexual Recombination
mBio 5;10(1) pii: e02740-18

Schoenfelder SMK, Lange C, Prakash SA, Marincola G, Lerch MF, Wencker FDR, Förstner KU, Sharma CM, Ziebuhr W (2019)
The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities
PLoS Pathogen 14;15(3):e1007618

Seethaler M, Hertlein T, Wecklein B, Ymeraj A, Ohlsen K, Lalk M, Hilgeroth A (2019)
Novel Small-molecule Antibacterials against Gram-positive Pathogens of Staphylococcus and Enterococcus Species
Antibiotics (Basel)2;8(4) pii: E210. doi: 10.3390

Shafeeq S, Pannanusorn S, Elsharabasy Y, Ramírez-Zavala B, Morschhäuser J, Römling U (2019)
Impact of manganese on biofilm formation and cell morphology of Candida parapsilosis clinical isolates with different biofilm forming abilities
FEMS Yeast Research 1;19(6)

Trübe P, Hertlein T, Mrochen DM, Schulz D, Jorde I, Krause B, Zeun J, Fischer S, Wolf SA, Walther B, Semmler T, Bröker BM, Ulrich RG, Ohlsen K, Holtfreter S (2019)
Bringing together what belongs together: Optimizing murine infection models by using mouse-adapted Staphylococcus aureus strains
Int J Med Microbiology 309(1):26-38

Velazquez EM, Nguyen H, Heasley KT, Saechao CH, Gil LM, Rogers AWL, Miller BM,Rolston MR, Lopez CA, Litvak Y, Liou MJ, Faber F, Bronner DN, Tiffany CR, Byndloss MX, Byndloss AJ, Bäumler AJ (2019)
Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection
Nature Microbiology 4(6):1057-1064

Wallaschek N, Niklas C, Pompaiah M, Wiegering A, Germer CT, Kircher S, Brändlein S, Maurus K, Rosenwald A, Yan HHN, Leung SY, Bartfeld S (2019)
Establishing Pure Cancer Organoid Cultures: Identification, Selection and Verification of Cancer Phenotypes and Genotypes
Journal Molecular Biology 12;431(15):2884-2893

Wang C, Chao Y, Matera G, Gao Q, Vogel J (2019)
The conserved 3' UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration
Nucleic Acids Research 48(4):2126–2143

Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J (2019)
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
mBio 2;10(1). pii: e02504-18