Däullary T, Imdahl F, Dietrich O, Hepp L, Krammer T, Fey C, Neuhaus W, Metzger M, Vogel J, Westermann AJ, Saliba AE, Zdzieblo D (2023)A primary cell-based in vitro model of the human small intestine reveals host Olfactomedin-4 induction in response to Salmonella Typhimurium infectionGut Microbes (accepted)

Dischinger U, Kötzner L, Kovatcheva-Datchary P, Kleinschmidt H, Haas C, Perez J, Presek C, Koschker AC, Miras AD, Hankir MK, Vogel J, Germer CT, Fassnacht M, Herrmann MJ, Seyfried F (2023)
Hypothalamic integrity is necessary for sustained weight loss after bariatric surgery: A prospective, cross-sectional study
Metabolism 138:155341

Hadjeras L*, Bartel J*, Maier LK*, Maaß S, Vogel V, Svensson SL, Eggenhofer F, Gelhausen R, Müller T, Alkhnbashi OS, Backofen R, Becher D, Sharma CM, Marchfelder A (2023)
Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimised mass spectrometry
µLife (in press)

Hadjeras L, Heiniger B, Maaß S, Scheuer R, Gelhausen R, Azarderakhsh S, Barth-Weber S, Backofen R, Becher D, Ahrens C#, Sharma CM#, Evguenieva-Hackenberg E# (2022)
Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics
µLife (accepted)

Homberger C, Hayward RJ, Barquist L, Vogel J (2023)
Improved bacterial single-cell RNA-seq through automated MATQ-seq and Cas9-based removal of rRNA reads
mBio (in press)

Homberger C, Saliba AE, Vogel J (2023)
A MATQ-seq-Based Protocol for Single-Cell RNA-seq in Bacteria
Methods in Molecular Biology 2584:105-12

Jiao C, Rechstadt C, König F, Homberger C, Yu J, Vogel J, Westermann AJ, Sharma CM, Beisel CL (2023)
RNA recording in single bacterial cells using reprogrammed tracrRNAs
Nature Biotechnology doi: 10.1038/s41587-022-01604-8 (Online ahead of print)

Jung JJ, Popella L, Do PT, Pfau P, Vogel J, Barquist L (2023)
Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON webserver
RNA rna.079263.122

Kirchner L, Marciniak T, Ziebuhr W, Scherf-Clavel O, Holzgrabe U (2023)
Development, validation and application of a selective and sensitive LC-MS/MS method for the quantification of daptomycin in a suspension of Mammaliicoccus sciuri in Mueller-Hinton broth
Journal of Pharmaceutical and Biomedical Analysis 227:115293

Michaux C, Gerovac M, Hansen EE, Barquist L, Vogel J (2023)
Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens
microLife (in press)

Raschig M, Ramírez-Zavala B, Wiest J, Saedtler M, Gutmann M, Holzgrabe U, Morschhäuser J, Meinel L (2023)
Azobenzene derivatives with activity against drug-resistant Candida albicans and Candida auris
Archiv der Pharmazie 356(2):e2200463


Aguilar C, Pauzuolis M, Pompaiah M, Vafadarnejad E, Arampatzi P, Fischer M, Narres D, Neyazi M, Kayisoglu Ö, Sell T, Blüthgen N, Morkel M, Wiegering A, Germer CT, Kircher S, Rosenwald A, Saliba AE, Bartfeld S (2022)
Helicobacter pylori shows tropism to gastric differentiated pit cells dependent on urea chemotaxis
Nature Communications 5;13(1):5878

Ataide MA, Knöpper K, Cruz de Casas P, Ugur M, Eickhoff S, Zou M, Shaikh H, Trivedi A, Grafen A, Yang T, Prinz I, Ohlsen K, Gomez de Agüero M, Beilhack A, Huehn J, Gaya M, Saliba AE, Gasteiger G, Kastenmüller W (2022)
Lymphatic migration of unconventional T cells promotes site-specific immunity in distinct lymph nodes
Immunity 11;55(10):1813-1828.e9

Barthels F, Meyr J, Hammerschmidt SJ, Marciniak T, Rader HJ, Ziebuhr W, Engels B, Schirmeister T (2022)
2-Sulfonylpyrimidines as Privileged Warheads for the Development of S. aureus Sortase A Inhibitors
Frontiers in Molecular Biosciences 8:804970

Bornet E, Westermann AJ (2022)
The ambivalent role of Bacteroides in enteric infections
Trends in Microbiology 30(2):104-108

Brandt P, Gerwien F, Wagner L, Krüger T, Ramıírez-Zavala B, Mirhakkak MH, Schäuble S, Kniemeyer O, Panagiotou G, Brakhage AA, Morschhäuser J, Vylkova S (2022)
Candida albicans SR-like protein kinases regulate different cellular processes: Sky1 is involved in control of ion homeostasis, while Sky2 is important for dipeptide utilization
Frontiers in Cellular and Infection Microbiology (accepted)

Chihara K, Gerovac M, Hör J, Vogel J (2022)
Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq)
RNA rna.079439.122

Cordero M, García-Fernández J, Acosta IC, Yepes A, Avendano-Ortiz J, Lisowski C, Oesterreicht B, Ohlsen K, Lopez-Collazo E, Förstner KU, Eulalio A, Lopez D (2022)
The induction of natural competence adapts staphylococcal metabolism to infection
Nature Communications 21;13(1):1525

Doorley LA, Rybak JM, Berkow EL, Zhang Q, Morschhäuser J, Rogers PD (2022)
Candida parapsilosis Mdr1B and Cdr1B Are Drivers of Mrr1-Mediated Clinical Fluconazole Resistance
Antimicrobial Agents and Chemotherapy e0028922

Gelhausen R, Müller T, Svensson SL, Alkhnbashi OS, Sharma CM, Eggenhofer F, Backofen R (2022)
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria
Briefings in Bioinformatics 23(2):bbab549

Gomez-Raya-Vilanova MV, Leskinen K, Bhattacharjee A, Virta P, Rosenqvist P, Smith JLR, Bayfield OW, Homberger C, Kerrinnes T, Vogel J, Pajunen MI, Skurnik M (2022)
The DNA polymerase of bacteriophage YerA41 replicates its T-modified DNA in a primer-independent manner
Nucleic Acids Research 50(7):3985-3997

Halloy F, Biscans A, Bujold KE, Debacker A, Hill AC, Lacroix A, Luige O, Strömberg R, Sundstrom L, Vogel J, Ghidini A (2022)
Innovative developments and emerging technologies in RNA therapeutics
RNA Biology 19(1):313-332

Herrera-Uribe J, Zaldívar-López S, Aguilar C, Entrenas-García C, Bautista R, Claros MG, Garrido JJ (2022)
Study of microRNA expression in Salmonella Typhimurium-infected porcine ileum reveals miR-194a-5p as an important regulator of the TLR4-mediated inflammatory response
Veterinary Research 53(1):35

Hör J, Jung J, Ðurica-Mitić S, Barquist L, Vogel J (2022)
INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors
Nucleic Acids Research 50(22):e128

Hör J, Jung J, Ðurica-Mitić S, Barquist L, Vogel J (2022)
INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors
Nucleic Acids Research 14:gkac838

Hung S, Dreher L, Diessner J, Schwarz S, Ohlsen K, Hertlein T (2022)
MRSA Infection in the Thigh Muscle Leads to Systemic Disease, Strong Inflammation, and Loss of Human Monocytes in Humanized Mice
Frontiers in Immunology 13:892053

Ibrahim ES, Ohlsen K (2022)
The Old Yellow Enzyme OfrA Fosters Staphylococcus aureus Survival via Affecting Thiol-Dependent Redox Homeostasis
Frontiers in Microbiology 13:888140

Jiao C, Rechstadt C, König F, Homberger C, Yu J, Vogel J, Westermann AJ, Sharma CM, Beisel CL (2022)
RNA recording in single bacterial cells using reprogrammed tracrRNAs
Nature Biotechnology doi: 10.1038/s41587-022-01604-8 (Online ahead of print)

Liao C, Sharma S, Svensson SL, Kibe A, Weinberg Z, Alkhnbashi OS, Bischler T, Backofen R, Caliskan N, Sharma CM, Beisel CL (2022)
Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA
Nature Microbiology 7(4):530-541

Matera G, Altuvia Y, Gerovac M, El Mouali Y, Margalit H, Vogel J (2022)
Global RNA interactome of Salmonella discovers a 5' UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity
Molecular Cell 82(3):629-644.e4

Parvizi Omran R, Ramírez-Zavala B, Aji Tebung W, Yao S, Feng J, Law C, Dumeaux V, Morschhäuser J, Whiteway M (20222)
The zinc cluster transcription factor Rha1 is a positive filamentation regulator in Candida albicans
Genetics 4;220(1): iyab155

Ponath F, Zhu Y, Cosi V, Vogel J (2022)
Expanding the genetic toolkit helps dissect a global stress response in the early-branching species Fusobacterium nucleatum
PNAS 2 4;119(40)

Popella L, Jung J, Do PT, Hayward RJ, Barquist L, Vogel J (2022)
Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli
Nucleic Acids Research 50(11):6435–52

Prezza G, Ryan D, Mädler G, Reichardt S, Barquist L, Westermann AJ (2022)
Comparative genomics provides structural and functional insights into Bacteroides RNA biology
Molecular Microbiology 117(1):67-85

Ramírez-Zavala B, Krüger I, Dunker C, Jacobsen ID, Morschhäuser J (2022)
The protein kinase Ire1 has a Hac1-independent essential role in iron uptake and virulence of Candida albicans
PLoS Pathogens 18(2): e1010283

Schneider C, Erhard F, Binotti B, Buchberger A, Vogel J, Fischer U (2022)
An unusual mode of baseline translation adjusts cellular protein synthesis capacity to metabolic needs
Cell Reports 11;41(2):111467

Schuster EM, Epple MW, Bremser A, Lucht K, Zimmermann J, Polyzou A, Ballabio A, Trompouki E, Vogel J, Büscher J, Westermann AJ, Rambold AS (2022)
Lysosomal signaling induces mitochondrial itaconate synthesis to suppress virulent bacterial growth states in macrophages
Nature Metabolism 4(7):856-866

Seethaler M, Hertlein T, Hopke E, Köhling P, Ohlsen K, Lalk M, Hilgeroth A (2022)
Novel Effective Fluorinated Benzothiophene-Indole Hybrid Antibacterials against S. aureus and MRSA Strains
Pharmaceuticals (Basel) 13;15(9):1138

Solar Venero EC, Matera G, Vogel J, López NI#, Tribelli PM# (2022)
Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress
Environmental Microbiology Reports Online ahead of print

Soundararajan M, Marincola G, Liong O, Marciniak T, Wencker FDR, Hofmann F, Schollenbruch H, Kobusch I, Linnemann S, Wolf SA, Helal M, Semmler T, Walther B, Schoen C, Nyasinga J, Revathi G, Boelhauve M, Ziebuhr W (2022)
Farming Practice Influences Antimicrobial Resistance Burden of Non-Aureus Staphylococci in Pig Husbandries
Microorganisms 11:31

Umstätter F, Werner J, Zerlin L, Mühlberg E, Kleist C, Klika KD, Hertlein T, Beijer B, Domhan C, Zimmermann S, Ohlsen K, Haberkorn U, Mier W, Uhl P(2022)
Impact of Linker Modification and PEGylation of Vancomycin Conjugates on Structure-Activity Relationships and Pharmacokinetics
Pharmaceuticals (Basel) 28;15(2):159

Vazquez-Laslop N, Sharma CM, Mankin A, Buskirk AR (2022)
Identifying small ORFs in prokaryotes with ribosome profiling
Journal of Bacteriology 18;204(1):e0029421

Yair Y, Michaux C, Biran D, Bernhard J, Vogel J, Barquist L, Ron EZ (2022)
Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli
mSystems e0008622


Omran RP, Ramírez-Zavala B, Tebung WA, Yao S, Feng J, Law C, Dumeaux V, Morschhäuser J, Whiteway M (2021)
The zinc cluster transcription factor Rha1 1 is a positive filamentation regulator in Candida albicans
Genetics 220(1):iyab155

Ramírez-Zavala B, Mottola A, Krüger I, Morschhäuser J (2021)
A suppressor mutation in the β-subunit Kis1 restores functionality of the SNF1 complex in Candida albicans snf4Δmutants
mSphere 6(6):e0092921

Svensson SL, Sharma CM (2021)
RNase III-mediated processing of a trans-acting bacterial sRNA and its cis-encoded antagonist
eLife doi.org/10.7554/eLife.69064

Svensson SL, Sharma CM (2021)
Small RNAs that target G-rich sequences are generated by diverse biogenesis pathways in Epsilonproteobacteria
Molecular Microbiology 117(1):215-233

Sharma S, Sharma CM (2021)
Identification of RNA Binding Partners of CRISPR-Cas Proteins in Prokaryotes Using RIP-Seq
Methods in Molecular Biology 2404:111-133

Aguilar C, Alves da Silva M, Saraiva M, Neyazi M, Olsson IAS, Bartfeld S (2021)
Organoids as host models for infection biology - a review of methods 
Experimental & Molecular Medicine 53(10):1471-1482

Liang C, Rios-Miguel AB, Jarick M, Neurgaonkar P, Girard M, François P, Schrenzel J, Ibrahim ES, Ohlsen K, Dandekar T (2021)
Staphylococcusaureus Transcriptome Data and Metabolic Modelling Investigate the Interplay of Ser/Thr Kinase PknB, Its Phosphatase Stp, the glmR/yvcK Regulon and the cdaA Operon for Metabolic Adaptation
Microorganisms 9(10):2148

Klünemann M, Andrejev S, Blasche S, Mateus A, Phapale P, Devendran S, Vappiani J, Simon B, Scott TA, Kafkia E, Konstantinidis D, Zirngibl K, Mastrorilli E, Banzhaf M, Mackmull MT, Hövelmann F, Nesme L, Brochado AR, Maier L, Bock T, Periwal V, Kumar M, Kim Y, Tramontano M, Schultz C, Beck M, Hennig J, Zimmermann M, Sévin DC, Cabreiro F, Savitski MM, Bork P, Typas A, Patil KR (2021)
Bioaccumulation of therapeutic drugs by human gut bacteria
Nature 597(7877):533-538

Vazquez-Laslop N, Sharma CM, Mankin A, Buskirk AR (2021)
Identifying small ORFs in prokaryotes with ribosome profiling
Journal of Bacteriology (online ahead of print)

Campa AR, Smith LM, Hampton HG, Sharma S, Jackson SA, Bischler T, Sharma CM, Fineran PC (2021)
The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR-Cas immune systems
Nucleic Acids Research 49(16):9508-9525

El Mouali Y, Ponath F, Scharrer V, Wenner N, Hinton JCD, Vogel J (2021)
Scanning mutagenesis of RNA-binding protein ProQ reveals a quality control role for the Lon protease
RNA (online ahead of print)

Fulde M*, van Vorst K*, Zhang K, Westermann AJ, Busche T, Huei YC, Welitschanski K, Froh I, Pägelow D, Johanna Plend, Pfarrer C, Kalinowski J, Vogel J, Weigand PV, Hensel M, Tedin K, Repnik U, Hornef MW (2021)
SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella containing vacuoles in vivo
Gut Microbes 13(1):1973836

Islam MS, Bandyra KJ, Chao Y, Vogel J, Luisi BF (2021)
Impact of pseudo-uridylation, substrate fold and degradosome organization on the endonuclease activity of RNase E
RNA (online ahead of print)

Masota NE, Vogg G, Ohlsen K, Holzgrabe U (2021)
Reproducibility challenges in the search for antibacterial compounds from nature
PLoS One 16(7):e0255437

Omran RP, Ramírez-Zavala B, Tebung WA, Yao S, Feng J, Law C, Dumeaux V, Morschhäuser J, Whiteway M (2021)
The zinc cluster transcription factor Rha1 1 is a positive filamentation regulator in Candida albicans
Genetics (accepted)

Stelzner K, Boyny A, Hertlein T, Sroka A, Moldovan A, Paprotka K, Kessie D, Mehling H, Potempa J, Ohlsen K, Fraunholz MJ, Rudel T (2021)
Intracellular Staphylococcus aureus employs the cysteine protease staphopain A to induce host cell death in epithelial cells
PLoS pathogens 17(9):e1009874

Vazquez-Laslop N, Sharma CM, Mankin A, Buskirk AR (2021)
Identifying small ORFs in prokaryotes with ribosome profiling
Journal of Bacteriology (online ahead of print)

Wicke L, Ponath F, Coppens L, Gerovac M, Lavigne R, Vogel J (2021)
Introducing differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ
RNA Biology 18(8):1099-1110

Prezza G*, Ryan D*, Mädler G, Reichardt S, Barquist L, Westermann AJ (2021)
Comparative genomics provides structural and functional insights into Bacteroides RNA biology
Molecular Microbiology DOI: 10.1111/mmi.14793

Pernitzsch SR, Alzheimer M, Bremer BU, Robbe-Saule M, de Reuse H, Sharma CM (2021)
Small RNA mediated gradual control of lipopolysaccharide biosynthesis control affects antibiotic resistance in Helicobacter pylori
Nature Communications

Ponath F, Tawk C, Zhu Y, Barquist L, Faber F, Vogel J (2021)
RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum
Nature Microbiology doi: 10.1038/s41564-021-00927-7)

Popella L, Jung J, Popova K, Ðurica-Mitić S, Barquist L, Vogel J (2021)
Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics
Nucleics Acids Research 49(8):4705-4724

Lamm-Schmidt V, Fuchs M, Sulzer J, Gerovac M, Hör J, Dersch P, Vogel J, Faber F (2021)
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production
microLife 2:uqab004

Jiao C, Sharma S†, Dugar G†, Peeck NL, Bischler T, Wimmer F, Yu Y, Barquist L, Schoen C, Kurzai C, Sharma CM*, Beisel CL* † Equally contributing; * Corresponding authors (2021)
Non-canonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9
Science 372(6545):941-948

Bauer M, Nascakova Z, Mihai AI, Cheng PF, Levesque MP, Lampart S, Hurwitz R, Pfannkuch L, Dobrovolna J, Jacobs M, Bartfeld S, Dohlman A, Shen X, Gall AA, Salama NR, Töpfer A, Weber A, Meyer TF, Janscak P, Müller A (2020)
κB axis links a bacterial carcinogen to R-loop-induced replication stress
Nature Communications 11(1):5117

Bernhardt L, Dittrich M, El‑Merahbi R, Saliba AE, Müller T, Sumara G, Vogel J, Nichols‑Burns S, Mitchell, Haaf T, El Hajj N (2021)
A genome‑wide transcriptomic analysis of embryos fathered by obese males in a murine model of diet‑induced obesity
Scientific Reports 11(1):1979

Da Vià MC, Dietrich O, Truger M, Arampatzi P, Duell J, Heidemeier A, Zhou X, Danhof S, Kraus S, Chatterjee M, Meggendorfer M, Twardziok S, Goebeler ME, Topp MS, Hudecek M, Prommersberger S, Hege K, Kaiser S, Fuhr V, Weinhold N, Rosenwald A, Erhard F, Haferlach C, Einsele H, Kortüm KM, Saliba AE, Rasche L (2021)            
Homozygous BCMA gene deletion in response to anti-BCMA CAR T cells in a patient with multiple myeloma
Nature Medicine 27(4):616-619

Westermann AJ, Vogel J (2021)
Cross-species RNA-seq for deciphering host-microbe interactions
Nat Rev Genet 22(6):361-378 Review

Marincola G, Jaschkowitz G, Kieninger AK, Wencker FDR, Feßler AT, Schwarz S, Ziebuhr W (2021)
Plasmid-chromosome crosstalk in Staphylococcus aureus: A horizontally acquired transcription regulator controls polysaccharide intercellular adhesin (PIA)-mediated biofilm formation
Front Cell Infect Microbiol (accepted)

Santos SC, Bischler T, Westermann AJ*, Vogel J* (2021)
MAPS integrates overlooked regulation of actin-targeting effector SteC into the virulence control network of
Salmonella small RNA PinT
Cell Reports 34 (5), 108722

Schmidt N, Lareau C, Keshishian H, Ganskih S, Schneider C, Hennig T, Melanson R, Werner S, Wei Y, Zimmer M, Ade J, Kirschner L, Zielinski S, Dölken L, Lander ES, Caliskan N, Fischer U, Vogel J, Carr S, Bodem J, Munschauer M (2021)
The SARS-CoV-2 RNA-protein interactome in infected human cells
Nature Microbiology 6(3):339-353

Tiffany CR, Lee JY, Rogers AWL, Olsan EE, Morales P, Faber F*, Baumler A* (2021)
The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum.
Microbiome (accepted)

Vazquez-Laslop N, Sharma CM, Mankin A, Buskirk AR (2021)
Identifying small ORFs in prokaryotes with ribosome profiling
Journal of Bacteriology (accepted)

Fuchs M, Lamm-Schmidt V, Sulzer J, Ponath F, Jenniches L, Kirk JA, Fagan RP, Barquist L, Vogel J, Faber F (2021)
An RNA-centric global view of Clostridioides difficile reveals broad activity of Hfq in a clinically important gram-positive bacterium
PNAS 22;118(25):e2103579118

Fuhr V, Vafadarnejad E, Dietrich O, Arampatzi P, Riedel A, Saliba AE, Rosenwald A, Rauert-Wunderlich H (2021)     
Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment.
International Journal of Molecular Sciences 22(5):2276

Rivera-Calzada A, Famelis N, Llorca O, Geibel S (2021)
Type VII secretion systems: structure, functions and transport models
Nat Rev Microbiol 26. doi: 10.1038

Bartfeld S (2021)
Realizing the potential of organoids-an interview with Hans Clevers
J Mol Med (Berl) 99(4):443-447

El Mouali Y, Gerovac M, Mineikaitė R, Vogel J (2021)
In vivo targets of Salmonella FinO include a FinP-like small RNA controlling copy number of a cohabitating plasmid
Nucleic Acids Research 49(9):5319-5335

Gerovac M, Vogel J, Smirnov A (2021)
The world of stable ribonucleoproteins and its mapping with Grad-seq and related approaches
Frontiers in Molecular Biosciences 7;8:661448

Gerovac M, Wicke L, Chihara K, Schneider C, Lavigne R, Vogel J (2021)
A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions
mBio 9;12(1):e03454-20

Hör J, Vogel J (2021)
Analysis of the RNA and Protein Complexome by Grad-seq
Methods Mol Biol 2300:183-201

Kayisoglu Ö, Schlegel N, Bartfeld S (2021)
Gastrointestinal epithelial innate immunity-regionalization and organoids as new model
J Mol Med (Berl) 99(4):517-530

Koo BK, Bartfeld S, Alev C (2021)
Organoids: ready for the revolution?
Journal of Molecular Medicine 99(4):441-442

Mottola A, Ramírez-Zavala B, Hünniger K, Kurzai O, Morschhäuser J (2021)
The zinc cluster transcription factor Czf1 regulates cell wall architecture and integrity in Candida albicans
Mol Microbiol 15. doi: 10.1111/mmi.14727

Pérez J (2021)
Fungi of the human gut microbiota: Roles and significance
Int J Med Microbiol 311(3):151490

Wallaschek N, Reuter S, Silkenat S, Wolf K, Niklas C, Kayisoglu Ö, Aguilar C, Wiegering A, Germer CT, Kircher S, Rosenwald A, Shannon-Lowe C, Bartfeld S (2021)
Ephrin receptor A2, the epithelial receptor for Epstein-Barr virus entry, is not available for efficient infection in human gastric organoids
PLoS Pathogens 17(2):e1009210

Wencker FDR, Marincola G, Schoenfelder SMK, Maaß S, Becher D, Ziebuhr W (2021)
Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: Unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decay
Nucleic Acids Research doi: 10.1093/nar/gkaa1277.
Online ahead of print

Westermann AJ, Kruck D, Hintzsche H (2021)
Biospektrum 27, 60-61


Aguilar C, Cruz AR, Rodrigues Lopes I, Maudet C, Sunkavalli U, Silva RJ, Sharan M, Lisowski C, Zaldívar-López S, Garrido JJ, Giacca M, Mano M, Eulalio A (2020)
Functional screenings reveal different requirements for host microRNAs in Salmonella and Shigella infection
Nature Microbiology 5(1):192-205. doi: 10.1038/s41564-019-0614-3

Alzheimer M, Svensson SL, König F, Schweinlin M, Metzger M, Walles H, Sharma CM  (2020)
A three-dimensional intestinal tissue model reveals factors and small regulatory RNAs important for colonization with Campylobacter jejuni
PLoS Pathogen 18;16(2):e1008304. doi: 10.1371/journal.ppat.1008304

Banchenko. S, Weise C, Lanka E, Saenger W, Geibel S (2020)
The helix bundle domain of primase RepB’ is required for dinucleotide formation and extension
bioRxiv doi: https://doi.org/10.1101/2020.02.20.955914

Barthels F, Marincola G, Marciniak T, Konhauser M, Hammerschmidt S, Bierlmeier J, Distler U, Wich PR, Tenzer S, Schwarzer D, Ziebuhr W, & Schirmeister T (2020)
Asymmetric Disulfanylbenzamides as Irreversible and Selective Inhibitors of Staphylococcus aureus Sortase A
ChemMedChem 15(10):839-850

Bauer M, Nascakova Z, Mihai AI, Cheng PF, Levesque MP, Lampart S, Hurwitz R, Pfannkuch L, Dobrovolna J, Jacobs M, Bartfeld S, Dohlman A, Shen X, Gall AA, Salama NR, Töpfer A, Weber A, Meyer TF, Janscak P, Müller A (2020)
The ALPK1/TIFA/NF-κB axis links a bacterial carcinogen to R-loop-induced replication stress
Nature Communications 11(1):5117

Bauriedl S, Gerovac M, Heidrich N, Bischler T, Barquist L, Vogel J, Schoen C (2020)
The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Nature Communications 11(1):2823

Chumduri C, Gurumurthy RK, Berger H, Dietrich O, Kumar N, Koster S, Brinkmann V, Hoffmann K, Drabkina M, Arampatzi P, Son D, Klemm U, Mollenkopf HJ, Herbst H, Mangler M, Vogel J, Saliba AE, Meyer TF (2020)
Opposing Wnt signals 1 regulate cervical squamocolumnar homeostasis and emergence of metaplasia
Nature Cell Biology in press

Domenech A, Brochadi AR, Sender V, Hentrich K, Henriques-Normark B, Typas A, Veening JW
Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer
Cell Host Microbe 22. pii: S1931-3128(20)30073-1

Eisenbart SK#, Alzheimer M#, Pernitzsch SR, Dietrich S, Stahl S, Sharma CM (2020)
A Repeat-Associated Small RNA Controls the Major Virulence Factors of Helicobacter pylori
Molecular Cell 80(2):210-226.e7

Gelhausen R, Heyl F, Svensson SL, Froschauer K, Hadjeras L, Sharma CM, Eggenhofer F, Backofen R (2020)
HRIBO - Workflow for high-throughput analysis of prokaryotic ribosome profiling experiments
Bioinformatics btaa959

Gerovac M, Mouali YEL, Kuper J, Kisker C, Barquist L, Vogel J (2020)
Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
RNA 26(10):1448-1463

Hennessen F, Miethke M, Zaburannyi N, Herrmann J, Loose M, Lukežič T, Hüttel S, Jansen R, Schmiedel J, Imirzalioglu C, Vogel J, Westermann AJ, Hesterkamp T, Stadler M, Wagenlehner F, Petković H, Müller R (2020)
Amidochelocardin overcomes resistance mechanisms exerted on tetracyclines and natural chelocardin.
Antibiotics 9(9):E619

Hollenhorst MI, Jurastow I, Nandigama R, Appenzeller S, Li L, Vogel J, Wiederhold S, Althaus M, Empting M, Altmüller J, Hirsch AKH, Flockerzi V, Canning BJ, Saliba AE, Krasteva-Christ G (2020)
Tracheal brush cells release acetylcholine in response to bitter tastants for paracrine and autocrine signaling
FASEB Journal 34(1):316-332

Hör J, Di Giorgio S, Gerovac M, Venturini E, Förstner KU, Vogel J (2020)
Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Nuclear Acids Research 48(16):9301-9319

Hör J, Garriss G, Di Giorgio S, Hack LM, Vanselow JT, Förstner KU, Schlosser A, Henriques-Normark B, Vogel J (2020)
Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control
EMBO J 39(9):e103852

Hör J, Matera G, Vogel J, Gottesman S, Storz G (2020)
Trans-acting small RNAs and their effects on gene expression in Escherichia coli and Salmonella enterica
EcoSal 9(1):10.1128/ecosalplus.ESP-0030-2019

Huber C, Stamm I, Ziebuhr W, Marincola G, Bischoff M, Strommenger B, Jaschkowitz G, Marciniak T, Cuny C, Witte W, Döllinger J, Schaudinn C, Thürmer A, Epping L, Semmler T, Lübke-Becker A, Wieler LH, & Walther B (2020)
Sillence as a way of niche adaptation: mecC-MRSA with variations in the accessory gene regulator (agr) functionality express kaleidoscopic phenotypes
Scientific Reports (accepted)

Imdahl F, Vafadarnejad E, Homberger C, Saliba AE*, Vogel J* (2020)
Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria
Nature Microbiology doi: 10.1038/s41564-020-0774-1. Online ahead of print

Josenhans C, Müthing J, Elling L, Bartfeld S, Schmidt H (2020)
How bacterial pathogens of the gastrointestinal tract use the mucosal glyco-code to harness mucus and microbiota: New ways to study an ancient bag of tricks
Int J Med Microbiology 16:151392. doi: 10.1016/j.ijmm.2020.151392

Kayisoglu O, Weiss F, Niklas C, Pierotti I, Pompaiah M, Wallaschek N, Germer CT, Wiegering A, Bartfeld S (2020)
Location-specific cell identity rather than exposure to GI microbiota defines many innate immune signalling cascades in the gut epithelium
Gut 22:gutjnl-2019-319919. doi: 10.1136

Korkut DN, Alves ID, Vogel A, Chabas S, Sharma CM, Martinez D, Loquet A, Salgado GF, Darfeuille F (2020)
Structural insights into the AapA1 toxin of Helicobacter pylori
Biochim Biophys Acta Gen Subj 1864(1):129423

Mayr EM, Ramírez-Zavala B, Krüger I, Morschhäuser J (2020)
A Zinc Cluster Transcription Factor Contributes to the Intrinsic Fluconazole Resistance of Candida auris
mSphere 22;5(2):e00279-20

Michaux C, Hansen EE, Jenniches L, Gerovac M, Barquist L, Vogel J, (2020)
Single-nucleotide RNA maps for the two major nosocomial pathogens Enterococcus faecalis and Enterococcus faecium
Frontiers in Cellular & Infection Microbiology in press

Mietrach N, Damián-Aparicio D, Isupov M, Krupka M, Lopez D, Geibel S (2020)
The conserved core component EsaA mediates bacterial killing by the type VIIb secretion system
Research Square doi: https://doi.org/10.21203/rs.3.rs-95626/v2

Mietrach N, Diana Damián-Aparicio, Mielich-Süß B, Lopez D, Geibel S (2020)
Substrate interaction with the EssC coupling protein of the type VIIb secretion system
Journal Bacteriology pii JB.00646-19

Mika-Gospodorz B*, Giengkam S*, Westermann AJ, Wongsantichon J, Kion-Crosby W, Chuenklin S, Wang LC, Sunyakumthorn P, Sobota RM, Subbian S, Vogel J, Barquist L, Salje J (2020)
Dual RNA-seq provides insight into the biology of the neglected intracellular human pathogen Orientia tsutsugamushi
Nature Communications 11(1):3363

Moreno-Velásquez SD, Tint SH, del Olmo Toledo V, Torsin S, De S, Pérez JC (2020)
The regulatory proteins Rtg1/3 govern sphingolipid homeostasis in the human associated yeast Candida albicans
Cell Reports 30:620-629

Mottola A, Schwanfelder S, Morschhäuser J (2020)
Generation of viable Candida albicans mutants lacking the “essential” protein kinase Snf1 by inducible gene deletion
mSphere 5: e00805-20

Mühlberg E, Umstätter F, Domhan C, Hertlein T, Ohlsen K, Krause A, Kleist C, Beijer B, Zimmermann S, Haberkorn U, Mier W, Uhl P (2020)
Vancomycin-Lipopeptide Conjugates with High Antimicrobial Activity on Vancomycin-Resistant Enterococci
Pharmaceuticals (Basel) 29;13(6):110

Parhi L, Alon-Maimon T, Sol A, Nejman D, Shhadeh A, Fainsod-Levi T, Yajuk O, Isaacson B, Abed J, Maalouf N, Nissan A, Sandbank J, Yehuda-Shnaidman E, Ponath F, Vogel J, Mandelboim O, Granot Z, Straussman R, Bachrach G (2020)
Breast cancer colonization by Fusobacterium nucleatum accelerates tumor growth and metastatic progression
Nature Communications 11(1):3259

Prezza G, Heckel T, Dietrich S, Homberger C, Westermann AJ*, Vogel J* (2020)
Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads
RNA 26(8):1069-1078

Riedel C, Förstner KU, Püning C, Alter T, Sharma CM, Gölz G (2020)
Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress
Frontier Microbiology 27;11:523

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni J, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T & LifeTime Community (2020)
LifeTime and improving European healthcare through cell-based interceptive medicine
Nature in press

Ruben S, Garbe E, Mogavero S, Albrecht-Eckardt D, Hellwig D, Häder A, Krüger T, Gerth K, Jacobsen ID, Elshafee O, Brunke S, Hünniger K, Kniemeyer O, Brakhage AA, Morschhäuser J, Hube B, Vylkova S, Kurzai O, Martin R (2020)
Ahr1 and Tup1 Contribute to the Transcriptional Control of Virulence-Associated Genes in Candida albicans
mBio 28;11(2):e00206-20

Ryan D, Jenniches L, Reichardt S, Barquist L, Westermann AJ (2020)
A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron
Nature Communications 11(1):3557

Saedtler M, Förtig N, Ohlsen K, Faber F, Masota N, Kowalick K, Holzgrabe U, Meinel L (2020)
Antibacterial Anacardic Acid Derivatives
ACS Infect Dis 10;6(7):1674-1685

Schulte LN*, Schweinlin M*, Westermann AJ, Janga H, Santos SC, Appenzeller S, Walles H, Vogel J, Metzger M (2020)
An advanced human intestinal co-culture model reveals compartmentalized host and pathogen strategies during Salmonella infection
mBio 11(1). pii: e03348-19

Schulte-Schrepping J, Reusch N, Paclik D, Baßler K, Schlickeiser S, Zhang B, Krämer B, et al., Nattermann J, Sawitzki B, Saliba AE, Sander LE; Deutsche COVID-19 OMICS Initiative, DeCOI (2020)
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
Cell in press (Vogel, J co-authorship as member of DeCOI)

Seelbinder B#, Wallstabe J#, Marischen L#, Weiss E, Wurster S, Page L, Löffler C, Bussemer L, Schmitt A-L, Wolf T, Linde J, Cicin-Sain L, Becker J, Kalinke U, Vogel J, Panagiotou G, Einsele H, Westermann AJ*, Schäuble S*, Löffler J* (2020)
Triple RNA-seq reveals synergy in a human virus-fungus co-infection model
Cell Reports 33(7):108389

Stanifer ML, Mukenhirn M, Muenchau S, Pervolaraki K, Kanaya T, Albrecht D, Odendall C, Hielscher T, Haucke V, Kagan JC, Bartfeld S, Ohno H, Boulant S (2020)
Asymmetric distribution of TLR3 leads to a polarized immune response in human intestinal epithelial cells
Nature Microbiology 5(1):181-191. doi: 10.1038/s41564-019-0594-3

Umstätter F, Domhan C, Hertlein T, Ohlsen K, Mühlberg E, Kleist C, Zimmermann S, Beijer B, Klika KD, Haberkorn U, Mier W, Uhl P (2020)
Vancomycin Resistance Is Overcome by Conjugation of Polycationic Peptides
Angew Chem Int Ed Engl 2;59(23):8823-8827

Venturini E, Svensson SL, Maass S, Gelhausen R, Eggenhofer F, Li L, Cain AK, Parkhill J, Becher D, Backofen R, Barquist L, Sharma CM, Westermann AJ, Vogel J (2020)
An integrative global data-driven census of Salmonella small proteins and their potential functions in virulence
microLife uqaa.002

Vogel J (2020)
An RNA biology perspective on species-specific programmable RNA antibiotics
Molecular Microbiology 113(3):550-559

Westmeier D, Posselt G, Hahlbrock A, Bartfeld S, Vallet C, Abfalter C, Docter D, Knauer SK, Wessler S, Stauber RH (2020)
Correction: Nanoparticle binding attenuates the pathobiology of gastric cancer-associated Helicobacter pylori
Nanoscale 23;12(3):2154-2155. doi: 10.1039/c9nr90287b

Wicke L, Ponath F, Coppens L, Gerovac M, Lavigne R, Vogel J (2020)
Introducing Differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ
RNA Biology in press

Yasrebi K, Schade N, Adeniyi ET, Wecklein B, Ymeraj A, Hertlein T, Ohlsen K, Suzen S, Lalk M, Ströhl D, Hilgeroth A (2020)
Novel effective antibacterial small-molecules against Staphylococcus and Enterococcus strains
Future Med Chem 12(13):1205-121



Aguilar C, Mano M, Eulalio A (2019)
MicroRNAs at the Host-Bacteria Interface: Host Defense or Bacterial Offense
Trends Microbiology 27(3):206-218

An SQ, Ding YC, Faber F, Hobley L, Sá-Pessoa J (2019)
Social behaviour and making attachments: a report from the fifth 'Young Microbiologists Symposium on MicrobeSignalling, Organisation and Pathogenesis'
Microbiology 165(2):138-145

Ashraf K, Yasrebi K, Adeniyi ET, Hertlein T, Ohlsen K, Lalk M, Erdmann F, Hilgeroth A (2019)
Antistaphylococcal evaluation of indole-naphthalene hybrid analogs
Drug Des Developmental Therapy 10;13:275-283

Chihara K, Bischler T, Barquist L, Monzon VA, Noda N, Vogel J, Tsuneda S (2019)
Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
mSystems 3;4(6). pii: e00590-19. doi:10.1128

Cottier F, Sherrington S, Cockerill S, Del Olmo Toledo V, Kissane S, Tournu H, Orsini L, Palmer GE, Pérez JC, Hall RA (2019)
Remasking of Candida albicans β-Glucan in Response to Environmental pH Is Regulated by Quorum Sensing
mBio 10:e02347-19

Famelis N, Rivera-Calzada A, Degliesposti G, Wingender M, Mietrach N, Skehel JM, Fernandez-Leiro R, Böttcher B, Schlosser A, Llorca O, Geibel S (2019)
Architecture of the mycobacterial type VII secretion system
Nature 576:321-325

Mietrach, N, Schlosser A, Geibel S (2019)
An extracellular domain of the EsaA membrane component of the type VIIb secretion system: expression, purification and crystallization
Acta Crystallographica F75, 725-730

Fan SH, Ebner P, Reichert S, Hertlein T, Zabel S, Lankapalli AK, Nieselt K, Ohlsen K, Götz F (2019)
MpsAB is important for Staphylococcus aureus virulence and growth at atmospheric CO(2) levels
Nature Communication 9;10(1):3627

Gerovac M, Vogel J (2019)
An RNA Surprise in Bacterial Effector Mechanisms
Cell Host Microbes 11;26(6):709-711

Heilmann C, Ziebuhr W, Becker K (2019)
Are coagulase-negative staphylococci virulent?
Clin Microbiol Infect 25(9):1071-1080

Hilgeroth A, Yasrebi K, Suzen S, Hertlein T, Ohlsen K, Lalk M (2019)
Antibacterial Evaluation of Novel Substituted Cycloheptaindoles in Staphylococcus and Enterococcus Strains
Medicinal  Chemistry 15(8):833-839

Korkut DN, Alves ID, Vogel A, Chabas S, Sharma CM, Martinez D, Loquet A,Salgado GF, Darfeuille F (2019)
Structural insights into the AapA1 toxin of Helicobacter pylori
Biochimica Biophysica Acta Gen Subj 30:129423

Kraus AJ, Brink BG, Siegel TN (2019)
Efficient and specific oligo-based depletion of rRNA
Scientific Reports 22;9(1):12281

Lerch MF, Schoenfelder SMK, Marincola G, Wencker FDR, Eckart M, Förstner KU, Sharma CM, Thormann KM, Kucklick M, Engelmann S, Ziebuhr W (2019)
A non-coding RNA from the intercellular adhesion (ica) locus of Staphylococcus epidermidis controls polysaccharide intercellular adhesion (PIA)-mediated biofilm formation
Molecular Microbiology 111(6):1571-1591

Litvak Y, Mon KKZ, Nguyen H, Chanthavixay G, Liou M, Velazquez EM, Kutter L, Alcantara MA, Byndloss MX, Tiffany CR, Walker GT, Faber F, Zhu Y, Bronner DN, Byndloss AJ, Tsolis RM, Zhou H, Bäumler AJ (2019)
Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition
Cell Host Microbe 9;25(1):128-139

Marincola G, Wencker FDR, Ziebuhr W (2019)
The Many Facets of the Small Non-coding RNA RsaE (RoxS) in Metabolic Niche Adaptation of Gram-Positive Bacteria
Journal Molecular Biolology 22;431(23):4684-4698. doi: 10.1016

Martins Gomes SF, Westermann AJ, Sauerwein T, Hertlein T, Förstner KU, Ohlsen K, Metzger M, Shusta EV, Kim BJ, Appelt-Menzel A, Schubert-Unkmeir A (2019)
Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis
Infection Front Microbiology 29;10:1181

Miyakoshi M, Matera G, Maki K, Sone Y, Vogel J (2019)
Functional expansion of a TCA cycle operon mRNA by a 3' end-derived small RNA
Nucleic Acids Research 28;47(4):2075-2088. doi: 10.1093/nar/gky1243

Mottola A, Morschhäuser J (2019)
An Intragenic Recombination Event Generates a Snf4-Independent Form of the Essential Protein Kinase Snf1 in Candida albicans
mSphere 19;4(3)

Nguyen MT, Saising J, Tribelli PM, Nega M, Diene SM, François P, Schrenzel J, Spröer C, Bunk B, Ebner P, Hertlein T, Kumari N, Härtner T, Wistuba D, Voravuthikunchai SP, Mäder U, Ohlsen K, Götz F (2019)
Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus
Frontier Microbiology 28;10:1157

Nishimoto AT, Zhang Q, Hazlett B, Morschhäuser J, Rogers PD (2019)
Contribution of Clinically Derived Mutations in the Gene Encoding the Zinc Cluster Transcription Factor Mrr2 to Fluconazole Antifungal Resistance and CDR1 Expression in Candida albicans
Antimicrobial Agents Chemotherapy 25;63(5)

Pérez JC (2019)
Candida albicans dwelling in the mammalian gut
Current Opinion Microbiology 24;52:41-46

Pérez JC (2019)
mSphere of Influence: a Systematic Approach To Dissect Virulence Traits in Candida albicans
mSphere 19;4(3)

Popp C, Ramírez-Zavala B, Schwanfelder S, Krüger I, Morschhäuser J (2019)
Evolution of Fluconazole-Resistant Candida albicans Strains by Drug-Induced Mating Competence and Parasexual Recombination
mBio 5;10(1) pii: e02740-18

Schoenfelder SMK, Lange C, Prakash SA, Marincola G, Lerch MF, Wencker FDR, Förstner KU, Sharma CM, Ziebuhr W (2019)
The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities
PLoS Pathogen 14;15(3):e1007618

Seethaler M, Hertlein T, Wecklein B, Ymeraj A, Ohlsen K, Lalk M, Hilgeroth A (2019)
Novel Small-molecule Antibacterials against Gram-positive Pathogens of Staphylococcus and Enterococcus Species
Antibiotics (Basel)2;8(4) pii: E210. doi: 10.3390

Shafeeq S, Pannanusorn S, Elsharabasy Y, Ramírez-Zavala B, Morschhäuser J, Römling U (2019)
Impact of manganese on biofilm formation and cell morphology of Candida parapsilosis clinical isolates with different biofilm forming abilities
FEMS Yeast Research 1;19(6)

Trübe P, Hertlein T, Mrochen DM, Schulz D, Jorde I, Krause B, Zeun J, Fischer S, Wolf SA, Walther B, Semmler T, Bröker BM, Ulrich RG, Ohlsen K, Holtfreter S (2019)
Bringing together what belongs together: Optimizing murine infection models by using mouse-adapted Staphylococcus aureus strains
Int J Med Microbiology 309(1):26-38

Velazquez EM, Nguyen H, Heasley KT, Saechao CH, Gil LM, Rogers AWL, Miller BM,Rolston MR, Lopez CA, Litvak Y, Liou MJ, Faber F, Bronner DN, Tiffany CR, Byndloss MX, Byndloss AJ, Bäumler AJ (2019)
Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection
Nature Microbiology 4(6):1057-1064

Wallaschek N, Niklas C, Pompaiah M, Wiegering A, Germer CT, Kircher S, Brändlein S, Maurus K, Rosenwald A, Yan HHN, Leung SY, Bartfeld S (2019)
Establishing Pure Cancer Organoid Cultures: Identification, Selection and Verification of Cancer Phenotypes and Genotypes
Journal Molecular Biology 12;431(15):2884-2893

Wang C, Chao Y, Matera G, Gao Q, Vogel J (2019)
The conserved 3' UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration
Nucleic Acids Research 48(4):2126–2143

Westermann AJ, Venturini E, Sellin ME, Förstner KU, Hardt WD, Vogel J (2019)
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
mBio 2;10(1). pii: e02504-18